Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene30650467305766253060708330554635305745873057233630576829305815093058551130589976305928233056543930566949305595403056088930560948305620013056803530568729305648913056495030602551
Basic Information
VIS ID
TVIS44027909
Fusion event
HTLV-1-PES1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
30998538/30602551 (Hg38)
End
30998538/30602551 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22B
Target gene
PES1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-30a-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-1286/Upstream/595438; hsa-let-7a-3/Downstream/129006;
Nearest TSS
ENST00000624155/Upstream/10611; ENST00000423350/Downstream/4287;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/10154, chr22-CpG: 21/Downstream/32820
Upstream sequence
ACAcaagagttccacccgccttggcctcccaacgtgctgcgattacaggtgtgaaccaccatgtccggccTCTTttttcttttattttcttttccttttt
Downstream sequence
ttcttttcttttgataaagataggggctcactatgttgcccaggcttgtctcaaactcctggcctcaagtgatcctgccactttggcctcccaaagtgct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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