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TVIS44027924
Basic Information
VIS ID
TVIS44027924
Fusion event
HTLV-1-GRAP2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
40348116/39952112 (Hg38)
End
40348116/39952112 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
GRAP2
miRNAs that regulate target gene
hsa-mir-3605-5p
;
hsa-mir-3679-5p
;
hsa-mir-1185-5p
;
hsa-mir-7153-5p
;
hsa-mir-146b-5p
;
hsa-mir-146a-5p
;
hsa-mir-4756-3p
;
hsa-mir-3925-5p
;
hsa-mir-3919
;
hsa-mir-1183
;
hsa-mir-383-5p
;
hsa-mir-129-5p
;
hsa-mir-550b-3p
;
hsa-mir-670-5p
;
hsa-mir-4313
;
hsa-mir-324-3p
;
hsa-mir-1913
;
hsa-mir-6752-3p
;
hsa-mir-361-3p
;
hsa-mir-4775
;
hsa-mir-4758-5p
;
hsa-mir-548s
;
hsa-mir-1238-5p
;
hsa-mir-3926
;
hsa-mir-4745-5p
;
hsa-mir-3190-5p
;
hsa-mir-4481
;
hsa-mir-7162-3p
;
hsa-mir-544b
;
hsa-mir-4459
;
hsa-mir-4433a-3p
;
hsa-mir-4768-3p
;
hsa-mir-6765-3p
;
hsa-mir-3622b-3p
;
hsa-mir-3620-3p
;
hsa-mir-3622a-3p
;
hsa-mir-6849-5p
;
hsa-mir-3681-5p
;
hsa-mir-504-5p
Nearest miRNA
hsa-mir-1286/Upstream/1963259; hsa-let-7a-3/Downstream/861771;
Nearest TSS
ENST00000624155/Upstream/5295;
ENST00000424496/Downstream/8285;
Nearest CpG islands
None/Target,
chr22-CpG: 279/Upstream/265562
,
chr22-CpG: 108/Downstream/42368
Upstream sequence
TGTGTGGtttttttttttttttttttctttttgagacagagtcttgctctgttgcccaggctggagtgcaatggcgcaatctcggctcactgcaacctcc
Downstream sequence
gcctcctgggttcaagcaattctcgtggctcagcctcccaagtagctgagattacaggcatgcaccaccatgcctggctaatttttgtctttatggtaga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HTLV-1 carrier#1
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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