Basic Information
VIS ID
TVIS44027942
Fusion event
HTLV-1-LOC284930 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
48203966/47808217 (Hg38)
End
48203966/47808217 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA22A
Target gene
LOC284930
Nearest miRNA
hsa-let-7a-3/Upstream/1694449; hsa-mir-12114/Downstream/466147;
Nearest TSS
ENST00000624155/Upstream/121976; ENST00000449941/Downstream/52454;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/594645, chr22-CpG: 25/Downstream/401128
Upstream sequence
AGTTAACTCTCATTTATCTGAAATCCTGTCTGTGGTAGCTCAGAAATCTGGGTCCATTCCTTCACTGACATTTCCTGTTTGTCAGCCTGGCCTAGCGTAG
Downstream sequence
GGGAAGAGTTGTTAATGCCCATCCATCCCATCCAGTGGCCGTCAGAATACCAGAGCAGGGCTTACGAGCCTGTGTCAGGGCCTCTGAAGGATTTAGACAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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