Basic Information
VIS ID
TVIS44027947
Fusion event
HTLV-1-ZBED4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50275065/49881417 (Hg38)
End
50275065/49881417 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZBED4
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-98-5p
Nearest miRNA
hsa-let-7a-3/Upstream/337951; hsa-mir-12114/Downstream/81449;
Nearest TSS
ENST00000624155/Upstream/27575; ENST00000610245/Downstream/20811;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/24552, chr22-CpG: 26/Downstream/4974
Upstream sequence
tgcagcctgggcgacagagtgatccgtctcaaaaaaaTTTGTTTTTCATTTTCTAATTCATCTGTAGAAATACAGTTGCTGtttttttgagataggatct
Downstream sequence
cactgttggccaggctggagtgcagtggcacaatgatagctcaccacagcctcaaacttttgggttcaaatcatcatgtctcctcagccttccaagcagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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