Basic Information
VIS ID
TVIS44027950
Fusion event
HTLV-1-ARMCX5-GPRASP2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
101938422/102683494 (Hg38)
End
101938422/102683494 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARMCX5-GPRASP2
Nearest miRNA
hsa-let-7f-2/Upstream/7620268; hsa-mir-105-1/Downstream/3956320;
Nearest TSS
ENST00000429181/Upstream/23782; ENST00000483720/Downstream/28682;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/31405, chrX-CpG: 95/Downstream/28545
Upstream sequence
cgtCAGTTTCTGaggaggtctcttttggccctgagctctgccaccttgggcaggtgggtggtggggggtgacatgggtatatgaaattgttctacttacc
Downstream sequence
ctcttcaatacatctattcctaggttgtttttttgtttttttgtttttttctacagcagggagctcgaaactttcagctggattcctgggctcccctaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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