Basic Information
VIS ID
TVIS44027952
Fusion event
HTLV-1-H2BFM integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
103296430/104041863 (Hg38)
End
103296430/104041863 (Hg38)
Orient
+
Location type
UTR3
Target gene
H2BFM
Nearest miRNA
hsa-let-7f-2/Upstream/8978637; hsa-mir-105-1/Downstream/2597951;
Nearest TSS
ENST00000429181/Upstream/1580; ENST00000423478/Downstream/34331;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1466, chrX-CpG: 47/Downstream/33859
Upstream sequence
cttctccttcatatgtagaaaccagtaaaggatggcactctcagtcaaaccatgaaacaaaagctggataaatgacaaaaatcaaaattttcttgagccc
Downstream sequence
atcagaAGTGGGAAAGAACCACCCCAGAGGGCCCAACACATAGCCACATAGATTATTCCACCATTTAAAGAGGACCCCTTGGTCAAGAGGGAAACAGGGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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