Basic Information
VIS ID
TVIS44027958
Fusion event
HTLV-1-MID2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
107120394/107877164 (Hg38)
End
107120394/107877164 (Hg38)
Orient
+
Location type
Intronic
Target gene
MID2
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-324-5p
Nearest miRNA
hsa-let-7f-2/Upstream/1237268; hsa-mir-105-1/Downstream/2178165;
Nearest TSS
ENST00000429181/Upstream/50750; ENST00000474517/Downstream/40338;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/50193, chrX-CpG: 37/Downstream/58836
Upstream sequence
ttagttccttgggattgccacttgcagccttccctgagatggcaaaccggagggctgaaccaatcctacactatcagcaaaggtctggattacttgcaag
Downstream sequence
gaaaagaaagtctgcatgtatggcctcagaccatctgtcctcatgtttacagaaaaggtccaactacacgatggtattgaaatgaatggttccttcctga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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