Basic Information
VIS ID
TVIS44027983
Fusion event
HTLV-1-TENM1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
124126296/124992447 (Hg38)
End
124126296/124992447 (Hg38)
Orient
-
Location type
Intronic
Target gene
TENM1
miRNAs that regulate target gene
hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-4778-3p ; hsa-mir-4698 ; hsa-mir-5680 ; hsa-mir-7154-5p ; hsa-mir-8060 ; hsa-mir-335-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-6516-3p ; hsa-mir-4536-5p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-215-3p
Nearest miRNA
hsa-let-7f-2/Upstream/3621394; hsa-mir-105-1/Downstream/9176931;
Nearest TSS
ENST00000429181/Upstream/28630; ENST00000632600/Downstream/327673;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/659100, chrX-CpG: 17/Downstream/210474
Nearby gene
TENM1(No orient, 28630)
Upstream sequence
atcagaaaacaacaccccaaaatgaaggcctcagaagcagcctcataagcaaaagcttctctctgaccttctcctgccctcctgtctcttagtcccattc
Downstream sequence
tccccgaagactagtcatagaaactagaacccctgttctccaaggcaggtcagagaaacaataaccccctttctccaaagccagccataaaacctaaatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate