Basic Information
VIS ID
TVIS44027984
Fusion event
HTLV-1-LOC107985698 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
127700709/128566731 (Hg38)
End
127700709/128566731 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985698
Nearest miRNA
hsa-let-7f-2/Upstream/7195678; hsa-mir-105-1/Downstream/5602647;
Nearest TSS
ENST00000429181/Upstream/514333; ENST00000486673/Downstream/33737;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1985393, chrX-CpG: 50/Downstream/956143
Nearby gene
ACTRT1(-514327) ;
Upstream sequence
CTGGGTATTTCCATCAGAGATACATCCTGAATTCAACAAGAAGAAGAGCAGTTAGGCACTTCTCATTTTGCTTGTTTAATATAGATAGTAGTCTGAGAGG
Downstream sequence
ATTTCCACCTTAATATTATGCTAAAACCATATCAACTGAAATCCTTTTTTGAATATCTGAGATTGGTATAAAATGTTAGTAAGATTAACAAATATAGTCG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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