Basic Information
VIS ID
TVIS44027993
Fusion event
HTLV-1-LOC100131617 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
134718812/135584887 (Hg38)
End
134718812/135584887 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100131617
Nearest miRNA
hsa-let-7f-2/Upstream/1038176; hsa-mir-105-1/Downstream/965991;
Nearest TSS
ENST00000429181/Upstream/4950; ENST00000594565/Downstream/128566;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/62685, chrX-CpG: 93/Downstream/388625
Nearby gene
INTS6L(+2352) ;
Upstream sequence
AAAGCCAAAGCACTATTTCTCCTTTTTGAAGCCACTGAAGGTAGCTTTTAAAGCTTGATTCATCACAGCCTTGCTATACAGCGTTAACAAGGACAATGCA
Downstream sequence
CAGTTGGCAAGTCATGAGAAATTGAATCCAAGCCTGTTGGCACTTTTTACAGTGTTTGCTCTTTTTTTAATTTTTAttttattattattatactttaagt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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