Basic Information
VIS ID
TVIS44028004
Fusion event
HTLV-1-LOC105373369 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
151162566/151994094 (Hg38)
End
151162566/151994094 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
LOC105373369
Nearest miRNA
hsa-let-7f-2/Upstream/34382; hsa-mir-105-1/Downstream/398125;
Nearest TSS
ENST00000429181/Upstream/19414; ENST00000453915/Downstream/144416;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/19195, chrX-CpG: 68/Downstream/643660
Nearby gene
GABRE(-19415) ;
Upstream sequence
gttacaatatagacagtaattctcagagagggcaaggaacttgcctagggtcacccagcatgtcaatggtggagttgggataagaaTTAATGTTGACTAC
Downstream sequence
GTTCTTGTCTAATTATTGCCCTAGCCCAGACAAAACAGAAAATCTAATTTTCTGGAAATTACTAGTTATGTCTATGTATTTTGCACAAATTTTTTTTTCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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