Basic Information
VIS ID
TVIS44028040
Fusion event
HTLV-1-LOC105373178 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
39625615/39766361 (Hg38)
End
39625615/39766361 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373178
Nearest miRNA
hsa-mir-23c/Upstream/105040; hsa-let-7f-2/Downstream/71200;
Nearest TSS
ENST00000429181/Upstream/331537; ENST00000447651/Downstream/81997;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/76934, chrX-CpG: 129/Downstream/54525
Nearby gene
MIR3937(+105040) ;
Upstream sequence
AACCCCTatctagtccaacctgtcccgctgacagatgaggaaaGAACTGCTAAGCAGCTCTGTGTCCCCACCCACACCCCAGCACATTCTTGTCCCCTAG
Downstream sequence
CAGCCATCCACTTccaggggtctgtgcatagtattcaagggtctatgaacttgagtgggagagacatttacatctttgtttcactaaactctgagatcaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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