Basic Information
VIS ID
TVIS44028051
Fusion event
HTLV-1-FTSJ1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
48334649/48476261 (Hg38)
End
48334649/48476261 (Hg38)
Orient
+
Location type
UTR5
Target gene
FTSJ1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-30c-1-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1587/Upstream/888756; hsa-let-7f-2/Downstream/1526887;
Nearest TSS
ENST00000429181/Upstream/1; ENST00000490202/Downstream/2420;
Nearest CpG islands
chrX-CpG: 80/Target, None/Upstream, None/Downstream
Upstream sequence
GATACGTCGACAATAGATGACGGGGCTCACGTTGTACGTTCACATCAGGTCCCGGCCCGCCGGAACCTGGGCGATCCACGATGCCGAGTTTGCCACGCTG
Downstream sequence
CGACAGCCCATAGGCTTGCCCCCCCGGGCATTCGGGTGGACTACGAACACAAACTGAAGCCCTAGGACTTGTCGCCCGTTTGCGCTCTCGCCGAGGCACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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