VISDB Viral Integration Site DataBase

VIS ID

TVIS44028056

Fusion event

HTLV-1-NLGN4X integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.31

Reference genome

Start

End

6042876/6124835 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-26b-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-6507-5p ; hsa-mir-574-5p ; hsa-mir-1277-5p ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-5011-5p ; hsa-mir-6501-3p ; hsa-mir-4797-5p ; hsa-mir-6128 ; hsa-mir-1324 ; hsa-mir-6504-3p ; hsa-mir-1243 ; hsa-mir-3654 ; hsa-mir-323a-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-23c ; hsa-mir-6831-3p ; hsa-mir-8066 ; hsa-mir-550b-3p ; hsa-mir-6758-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-5003-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-139-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-1248 ; hsa-mir-1237-3p

Nearest miRNA

hsa-mir-3690-1/Upstream/3515581; hsa-let-7f-2/Downstream/259071;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/221177, chrX-CpG: 138/Downstream/101244

Upstream sequence

GTGATCTGGTGGGTATCTATGGAAACCTATGCTCCTCAAAACACACATTCTCACatatacacgtatatctgtatttgtatttgtgaatatgtctatgtat

Downstream sequence

gtgtaaatgtgtCCATAGCTTTCAAGCACACACCGAACGTTTACAAAATCTGCCTTTCATAAAGAGTACTTTAAAGAAACAGCAGCATTCAGCACTATAT