Basic Information
VIS ID
TVIS44028067
Fusion event
HTLV-1-EDA integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
68975672/69755828 (Hg38)
End
68975672/69755828 (Hg38)
Orient
-
Location type
Intronic
Target gene
EDA
miRNAs that regulate target gene
hsa-let-7f-5p
Nearest miRNA
hsa-let-7f-2/Upstream/3736849; hsa-mir-105-1/Downstream/267029;
Nearest TSS
ENST00000429181/Upstream/135372; ENST00000616899/Downstream/201196;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/138609, chrX-CpG: 76/Downstream/306706
Upstream sequence
gcagctttgtttacctactcaagcctcagcaatggcagacgcccctcccccagcctcgctgccaccttgcagttcgatctcagactgctgtgctagcagc
Downstream sequence
gagtgaggcgctgtgggcatgggaccctccgagccaggcatgggatataatctcctggtgtgctgtttgctaaggctgttggaaaagcgcagtattagag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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