Basic Information
VIS ID
TVIS44028074
Fusion event
HTLV-1-FTX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
73500293/74280458 (Hg38)
End
73500293/74280458 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
FTX
Nearest miRNA
hsa-let-7f-2/Upstream/61840; hsa-mir-105-1/Downstream/6646;
Nearest TSS
ENST00000429181/Upstream/38310; ENST00000339534/Downstream/11617;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/174771, chrX-CpG: 29/Downstream/11900
Upstream sequence
CTCTCTTTCCCTACTTACCTTAATCACTATGTTACCTTAATCACTGAGAGGACCCTCCTTCTTTTGCTGCATGGTCACTCACATGGATGATCTGGTGGAC
Downstream sequence
TCTAAAATACTTTTCAAATATCCTTCACAATCCAGCCTAGTGAGAAGTTACAAAAAGAGAAAAGAGTGTTTGCATCATCTATGACCTTCCTGACACTCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate