Basic Information
VIS ID
TVIS44028094
Fusion event
HTLV-1-CSMD2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p35.1
Reference genome
NCBI36/hg18
Start
33837750/33599563 (Hg38)
End
33837750/33599563 (Hg38)
Orient
-
Location type
Intronic
Target gene
CSMD2
miRNAs that regulate target gene
hsa-mir-3941 ; hsa-mir-125b-2-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-495-5p ; hsa-mir-4650-5p ; hsa-mir-1972
Nearest miRNA
hsa-mir-12136/Upstream/267071; hsa-mir-101-1/Downstream/1070036;
Nearest TSS
ENST00000473358/Upstream/26973; ENST00000458277/Downstream/2914;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/126836, chr1-CpG: 20/Downstream/25442
Upstream sequence
tttaactttaggaggttaggtacttatatgattcctattttgtgcataataacattgaggctcagaagggtgaaatgacagacaaagttacatagcttgc
Downstream sequence
atgtgtcagagccaaggtttgaacccgtctgtgactctgaagtccatactcttatcactCTATGGGAAAGTCACAAGTCAAAATGACAGAGCCTTAAAGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate