Basic Information
VIS ID
TVIS44028097
Fusion event
HTLV-1-NIPSNAP3A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
106556927/104754825 (Hg38)
End
106556927/104754825 (Hg38)
Orient
-
Location type
Intronic
Target gene
NIPSNAP3A
Nearest miRNA
hsa-let-7a-1/Upstream/6525608; hsa-mir-12126/Downstream/1846103;
Nearest TSS
ENST00000422679/Upstream/1226; ENST00000461177/Downstream/9332;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/6338, chr9-CpG: 61/Downstream/9066
Upstream sequence
TGAAATTGTAATATATATTGTGACCTAAGTTCCTTGGGTCAGGTTCTTTCTCATTATAGAGTATGTTTTATTATTTATTGCCAAATGTTTAGTTTTTTGT
Downstream sequence
AATTTTTAAAATTGAGAAAATCTGTTTTACATCTTATTTATTTAGAATGTTAACTTATGAAACCTTCAAATGCTGAATAGCTGTTTTCCCTGATACATCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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