Basic Information
VIS ID
TVIS44028109
Fusion event
HTLV-1-PRRG1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
NCBI36/hg18
Start
37117538/37373364 (Hg38)
End
37117538/37373364 (Hg38)
Orient
+
Location type
Intronic
Target gene
PRRG1
miRNAs that regulate target gene
hsa-mir-106b-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p
Nearest miRNA
hsa-mir-23c/Upstream/4731805; hsa-let-7f-2/Downstream/650531;
Nearest TSS
ENST00000429181/Upstream/23985; ENST00000470290/Downstream/52388;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/23332, chrX-CpG: 45/Downstream/118367
Upstream sequence
ttggctattgggggtcttttgtagttcaacatgaattttaggatcattttctctatttctgtgaaaaatgtcattgaaattttgatagggattccattga
Downstream sequence
atctatagattgctttgggtggcaaggacattttaacaatattaattcttccattccatgaaaatagtgtgtctttccatttattcatgacttttccaaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate