Basic Information
VIS ID
TVIS44028117
Fusion event
HTLV-1-LOC105376600 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
NCBI36/hg18
Start
27207885/27229762 (Hg38)
End
27207885/27229762 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376600
Nearest miRNA
hsa-mir-210/Upstream/3810572; hsa-let-7a-2/Downstream/285208;
Nearest TSS
ENST00000527297/Upstream/9649; ENST00000525833/Downstream/120662;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/897497, chr11-CpG: 29/Downstream/133310
Upstream sequence
cccaaacccacgaaatcacaatcttctgagagcacaggaatctggggtttacaaactcacatagaagatccttgtgcttcttgaagtttcataaacattT
Downstream sequence
ATTTCCAAGGCAAGAGAGCCTAGAATGGGAGCAAATCACAGCTGGTAAGCCAAACCTTGcatgagcattaagaatggcttttaaatttttagttgtctaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate