Basic Information
VIS ID
TVIS44028119
Fusion event
HTLV-1-LAMA1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
NCBI36/hg18
Start
6950749/6960750 (Hg38)
End
6950749/6960750 (Hg38)
Orient
-
Location type
Intronic
Target gene
LAMA1
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-3976/Upstream/586325; hsa-mir-1-2/Downstream/3798834;
Nearest TSS
ENST00000575820/Upstream/55; ENST00000581502/Downstream/4797;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/30661, chr18-CpG: 17/Downstream/50518
Upstream sequence
ggttatatgaatttcagctcaactacaaaaaAAAAAAAAAAGATCAGTGGAACTCATTAACCAGTCGTAGTCACTGTCAGCCCTTCCCCAAGTATGTCGT
Downstream sequence
GACATGtttgggttctgcaaacttgtgttccagtcctgactgtgactcataccagtggtgtgaccttggtcaggtttactaggctctctcagcacatttc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate