Basic Information
VIS ID
TVIS44028124
Fusion event
HTLV-1-SLC39A12 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p12.33
Reference genome
NCBI36/hg18
Start
18309483/17980548 (Hg38)
End
18309483/17980548 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC39A12
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1265/Upstream/135355; hsa-mir-107/Downstream/2571422;
Nearest TSS
ENST00000439456/Upstream/28634; ENST00000468177/Downstream/26722;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/336212, chr10-CpG: 122/Downstream/159648
Upstream sequence
TCTTATTTCAATAGAAAACATCCATTTGTGAGAGTGAAACTACCCGTCATTCTCACTCACCTACTAAAACTTTTAAATTGTAATTTTTGAAGTACACAAC
Downstream sequence
GTCAACCTTTATTCTGAGATGGACAAATGTCTTTTGGCCCTTTTTAGAGACTGTGGCATTTGTTCTTTCCTTATTCTTCTCTCTCATAAATATGCCTATA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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