Basic Information
VIS ID
TVIS44028133
Fusion event
HTLV-1-BRINP3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
188512847/190277094 (Hg38)
End
188512847/190277094 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
BRINP3
Nearest miRNA
hsa-mir-101-1/Upstream/9838704; hsa-mir-1182/Downstream/2439234;
Nearest TSS
ENST00000473358/Upstream/12196; ENST00000436905/Downstream/197707;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3596145, chr1-CpG: 56/Downstream/2531408
Upstream sequence
ATGATGCCTAGAATAAAAACTATTCTTCAAAGTTTTTCTAAATTAACAAATCTTATTATATTGTCTATTTGATCCTGAAATAAATTTTGGTTTtatatat
Downstream sequence
atatatatatatatatatatatatttatatTCAGAAAAGAAAACTTTTTCCCTGCATTCCTCTACATGAGAAATTGTTTTTTGTAAACAATCCTCACTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate