Basic Information
VIS ID
TVIS44028150
Fusion event
HTLV-1-LINC00383 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q21.33
Reference genome
NCBI36/hg18
Start
68762028/69289895 (Hg38)
End
68762028/69289895 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LINC00383
Nearest miRNA
hsa-mir-1297/Upstream/3071571; hsa-mir-1267/Downstream/8408117;
Nearest TSS
ENST00000623511/Upstream/67549; ENST00000431686/Downstream/21438;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/304723, chr13-CpG: 42/Downstream/817705
Upstream sequence
caaaagcacagattaaaatggaatcaataaatttaaatatatcagtaattaaacaaatgtaaatgaattaaacttatgctttataagtcatttatgatca
Downstream sequence
gattggattcgaattagacagttacaggtttctaaagagactaaaccaaaacacaacaaagaaagagtgaaaataaaatagagaaaaTACCTTCTAGAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate