Basic Information
VIS ID
TVIS44028158
Fusion event
HTLV-1-CHMP4C integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
NCBI36/hg18
Start
82826336/81751546 (Hg38)
End
82826336/81751546 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHMP4C
miRNAs that regulate target gene
hsa-mir-30c-2-3p
Nearest miRNA
hsa-mir-12123/Upstream/1510073; hsa-mir-10400/Downstream/9453939;
Nearest TSS
ENST00000518652/Upstream/18643; ENST00000524337/Downstream/40277;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/18932, chr8-CpG: 44/Downstream/90273
Upstream sequence
GAGTGGGAAGGGAATCTTATTTGGGAACAATAAATTATAGATACTGATTAATTTCCTTTCAACATAGAAGAAAACTTGTTTAATTATATGTGTCTTAagg
Downstream sequence
gtatccattaagagaaaaaattcagtatatacaattgcccaacaattaaagggaaaaaatgaacaaagacaatttaatcgatctacataaagacaagaaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate