Basic Information
VIS ID
TVIS44028189
Fusion event
HTLV-1-ANKRD26P3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
NCBI36/hg18
Start
18791128/19318988 (Hg38)
End
18791128/19318988 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANKRD26P3
Nearest miRNA
hsa-mir-1267/Downstream/1114790;
Nearest TSS
ENST00000623511/Upstream/55115; ENST00000413833/Downstream/26061;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/141645, chr13-CpG: 58/Downstream/25457
Upstream sequence
CTTTGATCCACAGTACCGTAGTTAAAACTATCATAATTACCAGAAAAAGAATAATTTGTGAATAACCACAATATTGGGCTTTTCTCCCTAGATGGAAAGA
Downstream sequence
GCCAACAGAATCCAAAATATGCATATAACTTCCAGATAAAATTGTCAAAATGAACCCATATCAAATTGGTTTTTAAGTAAGAATCCATTTAATGTCTAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate