Basic Information
VIS ID
TVIS44028190
Fusion event
HTLV-1-ARL14EPL integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
NCBI36/hg18
Start
115420394/116056798 (Hg38)
End
115420394/116056798 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARL14EPL
miRNAs that regulate target gene
hsa-mir-338-5p ; hsa-mir-6882-5p ; hsa-mir-590-3p
Nearest miRNA
hsa-mir-10397/Upstream/5542883; hsa-mir-103a-1/Downstream/198945;
Nearest TSS
ENST00000502646/Upstream/5332; ENST00000515539/Downstream/21772;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/93358, chr5-CpG: 61/Downstream/28086
Upstream sequence
gttttagacatgaagttcttgcccatgcctatatcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctt
Downstream sequence
taatccatcttgaattaatttttgtataaggtgtaaggaagggatccaatttcagctttctacatatggctagccagttttcccagcaccatttgttaaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate