VISDB Viral Integration Site DataBase

VIS ID

TVIS44028197

Fusion event

HTLV-1-BBC3 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr19

Cytoband

q13.32

Reference genome

Start

End

52416914/47221817 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-221-3p ; hsa-mir-483-3p ; hsa-mir-222-3p ; hsa-mir-29b-3p ; hsa-mir-125b-5p ; hsa-mir-296-5p ; hsa-mir-504-5p ; hsa-mir-149-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-625-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-2861 ; hsa-mir-765 ; hsa-mir-6828-5p ; hsa-mir-4755-3p ; hsa-mir-6089 ; hsa-mir-4649-3p ; hsa-mir-5008-5p ; hsa-mir-544b ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4733-3p ; hsa-mir-4779 ; hsa-mir-6753-5p ; hsa-mir-29c-3p ; hsa-mir-29a-3p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-1225-3p ; hsa-mir-3663-3p ; hsa-mir-1252-5p ; hsa-mir-759 ; hsa-mir-3943 ; hsa-mir-5586-3p ; hsa-mir-4523 ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-1228-5p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-4767 ; hsa-mir-6820-5p ; hsa-mir-6087 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-3124-3p ; hsa-mir-4770 ; hsa-mir-4324 ; hsa-mir-143-3p ; hsa-mir-6088 ; hsa-mir-1910-5p ; hsa-mir-24-3p ; hsa-mir-2467-3p ; hsa-mir-4264 ; hsa-mir-4286 ; hsa-mir-455-3p ; hsa-mir-4640-3p ; hsa-mir-484 ; hsa-mir-6795-3p

Nearest miRNA

hsa-mir-10395/Upstream/512463; hsa-let-7e/Downstream/5125;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/90710, chr19-CpG: 88/Downstream/4243

Nearest cancer related gene

BBC3(TSG, No orient, 0)

Upstream sequence

AGTCCCCCGCGCTGGCCAGGGTGTCAGGAGGTGGGAGGGGCCTGCCCCCCGAGTCCCTGACGTCCACCGGGCGGGTGCAGGCACCTAATTGGGCTCCATC

Downstream sequence

TCGGGGGCTCTGTGGCCCCTGGGTAAGGGCAGGAGTCCCATGATGAGATTGTACAGGACCCTCCAGGGTGAGGGGCGGTGCCGCTGCTGCTCCTCTTGTC