Basic Information
VIS ID
TVIS44028205
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
NCBI36/hg18
Start
94915194/94677050 (Hg38)
End
94915194/94677050 (Hg38)
Orient
-
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/133271; hsa-mir-11399/Downstream/3368192;
Nearest TSS
ENST00000473358/Upstream/84753; ENST00000422520/Downstream/143292;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/134967, chr1-CpG: 70/Downstream/142996
Nearby gene
PGBD4P7(-2889) ; LOC105378860(+6422) ;
Upstream sequence
gagaaaggcattcagtcttccaagtggacacagtgtccccgcgcacggctggcaagcagggtgcaggctgatttcagccagctcggcccctcagGGATAG
Downstream sequence
TGTGTAAGGTGCCCCTGGCCCCTGGGGTTACCTGGCTTTGCTATGAGGATCTCTGGCTGCTCTGGAGAGAGTTAAAAGTGTCTTAGCTTTTGGAATGCTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate