Basic Information
VIS ID
TVIS44028211
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
NCBI36/hg18
Start
79124735/78886462 (Hg38)
End
79124735/78886462 (Hg38)
Orient
-
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/1826260; hsa-mir-11399/Downstream/6247332;
Nearest TSS
ENST00000473358/Upstream/223727; ENST00000415629/Downstream/31423;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/394631, chr1-CpG: 33/Downstream/120134
Nearby gene
ADGRL4(+3302) ;
Upstream sequence
CATGAATTGCCTGGTTGAGGGTGTGAGTAGGAATGGGGGATGGGAATAAATGTGCAAGGAAAGGGCAGCGAAGCGAGAGAAAAAGAATAAAAACACATTA
Downstream sequence
ACTTAAAACTTATGCTATGCACTTATTTCAAATCACAGATGCATGTAGAAAAGACATTAAAATCCCATGTTAAAAAAGTATGTCggctgggtgcggtggc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate