Basic Information
VIS ID
TVIS44028218
Fusion event
HTLV-1-DPH6 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
NCBI36/hg18
Start
33563330/35483837 (Hg38)
End
33563330/35483837 (Hg38)
Orient
-
Location type
Intronic
Target gene
DPH6
Nearest miRNA
hsa-mir-1233-1/Upstream/111473; hsa-mir-10393/Downstream/443019;
Nearest TSS
ENST00000557528/Upstream/29077; ENST00000560866/Downstream/58654;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/361598, chr15-CpG: 56/Downstream/62088
Upstream sequence
gaacattcacagcagcattacacatactagccaaaaatggaaacaattcaattttcgattaatttgtgaataagcaaaatacaacatattggtataatag
Downstream sequence
aatactattcagcaataaaaagaaatgaagtactgatgtgtacaacgtgaatgaacctcaaaaacatgttaaatgaatgcagccagctaaacagactaca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate