Basic Information
VIS ID
TVIS44028236
Fusion event
HTLV-1-LOC108254669 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
NCBI36/hg18
Start
32194643/31956455 (Hg38)
End
32194643/31956455 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC108254669
Nearest miRNA
hsa-mir-12136/Upstream/197720; hsa-mir-101-1/Downstream/130494;
Nearest TSS
ENST00000473358/Upstream/11599; ENST00000492989/Downstream/30579;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11426, chr1-CpG: 155/Downstream/57046
Upstream sequence
CAGGCCTTTCTCTGGAATCTTGTTTGACACAAACTTTTTGCCTTTGGACAAACTCTCTCCTTCCCTCCGTATCCCAGGCCTCAGGAGAGTCGAAACCCTG
Downstream sequence
ACTCCCATTCTCACTGTCCACTCATTTCTCAGTCCCTGTCATTTGACTTCTGCCCAGCCACTGAACTGTCTGTCATCACACTCAGTGATGATCTTTTCAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate