Basic Information
VIS ID
TVIS44028254
Fusion event
HTLV-1-CAMK1D integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
NCBI36/hg18
Start
12807598/12725593 (Hg38)
End
12807598/12725593 (Hg38)
Orient
+
Location type
Intronic
Target gene
CAMK1D
miRNAs that regulate target gene
hsa-mir-6778-3p ; hsa-mir-6719-3p ; hsa-mir-150-5p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-323a-3p ; hsa-mir-562 ; hsa-mir-145-5p
Nearest miRNA
hsa-mir-3155a/Upstream/240; hsa-mir-107/Downstream/1657607;
Nearest TSS
ENST00000439456/Upstream/375860; ENST00000615792/Downstream/34983;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/375003, chr10-CpG: 78/Downstream/275501
Nearest cancer related gene
CAMK1D(OG, No orient, 0)
Upstream sequence
AAACATGATTTCTAAAAAGATGATTTAGCCAGAAGAGTTAGTAATCTGACAAAGTTTAACAGCTTTCTTAAAAAGTCATAAGTACCCACTGGCAATGTCA
Downstream sequence
ATTACTACTTTATTTTCTCAACAGTCTTCTCTCATTTCGGCATCTTGCAGGAAAGAGCAACATCATGAGGCGTGTCTACACCTGCTTCTGTGGGAGAAGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate