Basic Information
VIS ID
TVIS44028268
Fusion event
HTLV-1-LINC02351 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
NCBI36/hg18
Start
96707419/98346667 (Hg38)
End
96707419/98346667 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02351
Nearest miRNA
hsa-mir-10393/Upstream/2013360; hsa-mir-1302-10/Downstream/437759;
Nearest TSS
ENST00000557528/Upstream/19173; ENST00000558355/Downstream/139230;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/385248, chr15-CpG: 68/Downstream/74711
Upstream sequence
tagtccatccgggctgctataacaaaacaccatagactgaatggcttataaactgtggacatctatttctcacagttctggaggctggaacgtccgagat
Downstream sequence
caagacatcattatggctgggttttggtgaagtctctctccttgggttgcagacagctgccttctcactgtgctcacatggtggaaggagagagagggcg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate