Basic Information
VIS ID
TVIS44028273
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
NCBI36/hg18
Start
80621665/80383392 (Hg38)
End
80621665/80383392 (Hg38)
Orient
-
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/3323190; hsa-mir-11399/Downstream/4750402;
Nearest TSS
ENST00000473358/Upstream/8771; ENST00000418041/Downstream/152363;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/52191, chr1-CpG: 281/Downstream/1416921
Upstream sequence
actaggtttacagattccaacaccagttttctttacattgcTCTTTAATTCACACTGTCTAGATCTCCAACGAAATCATTTGTGCTTTCAGGTGATAACC
Downstream sequence
ACCTCCAGAGCAGAAGCCAGAAAACTTCCTACTTCGTAAGTGCTCAGAAGATACCCTCAGTAAAGATTTGTTGATGCTTTGGGGGCTCTGTGCGCTGTTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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