Basic Information
VIS ID
TVIS44028274
Fusion event
HTLV-1-MIR99AHG integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
16705943/16411752 (Hg38)
End
16705943/16411752 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIR99AHG
Nearest miRNA
hsa-mir-10396a/Upstream/2687478; hsa-let-7c/Downstream/127337;
Nearest TSS
ENST00000624081/Upstream/81148; ENST00000435697/Downstream/7328;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/681268, chr21-CpG: 138/Downstream/1100736
Nearest cancer related gene
MIR99AHG(OG, No orient, 0)
Upstream sequence
ttgagcagtgttttgtaattccccttgaagaggtccttcacatccctggtaagttggattcctaggtattttattctctttgaaacaattgtgaatggga
Downstream sequence
gttcactcatgatttggctctctgtttgtctgttattgatgtgtaagaatgtttgtgatttttgcacattgattttgtatcctgagactttgctgaagtt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate