Basic Information
VIS ID
TVIS44028324
Fusion event
HTLV-1-RPS27P25 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
NCBI36/hg18
Start
119293595/120371409 (Hg38)
End
119293595/120371409 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E ; FRA12C
Target gene
RPS27P25
Nearest miRNA
hsa-let-7i/Upstream/215910; hsa-mir-3612/Downstream/351784;
Nearest TSS
ENST00000382841/Upstream/2229; ENST00000536933/Downstream/18137;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1853, chr12-CpG: 33/Downstream/26374
Upstream sequence
TGCTGGTGCTGCTGGGCAGATGAGCTTGAAGGATAGGAAATGGGTCCTTTCCGGCAGTGGCGACCTACCCACGAGAACATGCCTCTCGACAGGGATCTCC
Downstream sequence
TTCATCCTTCTCCAGAAGAGAAGAGGAAACAGAAGAAGAAACGCCTGGTGCAGAGTCCCGATTCCTACTTCATGGATATGACATGCCCAGGATGCTATAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate