Basic Information
VIS ID
TVIS44028327
Fusion event
HTLV-1-C11orf88 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q23.1
Reference genome
NCBI36/hg18
Start
110890860/111514925 (Hg38)
End
110890860/111514925 (Hg38)
Orient
+
Location type
Intronic
Target gene
C11orf88
Nearest miRNA
hsa-mir-10392/Upstream/1410; hsa-let-7a-2/Downstream/1935098;
Nearest TSS
ENST00000527297/Upstream/140; ENST00000529661/Downstream/1117;
Nearest CpG islands
chr11-CpG: 27/Target, None/Upstream, None/Downstream
Upstream sequence
GTCCCAGGAAATGTGCCCCCCGGGATTACTGGTATTTGCTGGCTCCTCGGAACAAGATGCCAACTTGGCTAAGCAGTTCTGGATCTCGGCGTCGATGTAT
Downstream sequence
CCCCCTAGCGAATCTCAGCTGGTGCTGCGCAGAGACAGCAGTCAGCGTCTGCCGGTGGCGCGGCCCAGGAGGAGCAGAGGGTCTGGTGAGTAGAATAGCG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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