Basic Information
VIS ID
TVIS44028339
Fusion event
HTLV-1-LOC101927762 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
NCBI36/hg18
Start
971056/935116 (Hg38)
End
971056/935116 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101927762
Nearest miRNA
hsa-mir-5699/Upstream/293338; hsa-mir-107/Downstream/1140903;
Nearest TSS
ENST00000439456/Upstream/2090; ENST00000360059/Downstream/52903;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2136, chr10-CpG: 26/Downstream/24355
Upstream sequence
CCTGTGGAAAGAAGACCCTTCACACGCTAGTCCCAGCCTGTCTTCAGCCCAGCCCCCTGTGTTTCCTTTCCTGCCTTATCCTAAGACATCCTTACCTTCC
Downstream sequence
AATCACACTCACTTTCCGAGCATTTTTGAAGGTATTGAGGGAGTTGATGAGTCTACACTTGAATAAAATACAGACTTTACACTCCAGACTGCACAGTTGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate