VISDB Viral Integration Site DataBase

VIS ID

TVIS44028344

Fusion event

HTLV-1-MRNIP integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr5

Cytoband

q35.3

Reference genome

Start

End

179212984/179853378 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6720-3p ; hsa-mir-668-5p ; hsa-mir-4252 ; hsa-mir-1273g-3p ; hsa-mir-3934-5p ; hsa-mir-6504-3p ; hsa-mir-552-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-520f-5p ; hsa-mir-4282 ; hsa-mir-4633-5p ; hsa-mir-6787-3p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-4714-3p ; hsa-mir-532-5p ; hsa-mir-216a-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-3714 ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-5690 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-216b-5p ; hsa-mir-34b-3p ; hsa-mir-1910-3p ; hsa-mir-1976 ; hsa-mir-2467-3p ; hsa-mir-3192-5p ; hsa-mir-3612 ; hsa-mir-3653-5p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4279 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4722-3p ; hsa-mir-490-3p ; hsa-mir-498 ; hsa-mir-5571-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6819-3p ; hsa-mir-6877-3p ; hsa-mir-7851-3p ; hsa-mir-1237-5p ; hsa-mir-134-5p ; hsa-mir-3118 ; hsa-mir-3136-5p ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-4439 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4488 ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-4513 ; hsa-mir-4697-5p ; hsa-mir-486-3p ; hsa-mir-5190 ; hsa-mir-6786-3p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6855-3p ; hsa-mir-6857-3p ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-10397/Upstream/55032; hsa-mir-340/Downstream/161925;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/3310, chr5-CpG: 122/Downstream/4872

Upstream sequence

GTTTGAGAGAGGATGATCCCAGCTGTGGCATGCTGGGACTCCCTGGAAGGGCTCGCTGCAGGCCTGCGCCCCACTTGCTTTCTGTTTTGTAGGACTCACC

Downstream sequence

TGCAAAAAGGACTGCTTCTCTCCACAAGCTTTGCATGTCCACTTGACACTCTTTTTTACCTGCAATGAAATTTCAGAAATACAACTCAGATAATTATTTA