Basic Information
VIS ID
TVIS44028345
Fusion event
HTLV-1-LOC105373664 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
146076766/145602728 (Hg38)
End
146076766/145602728 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2K
Target gene
LOC105373664
Nearest miRNA
hsa-mir-128-1/Upstream/5016043; hsa-mir-10b/Downstream/3727550;
Nearest TSS
ENST00000437798/Upstream/14704; ENST00000414967/Downstream/695;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1078240, chr2-CpG: 49/Downstream/984505
Upstream sequence
GAAAATTCAACTGAAGTATCCTCTAAACTTAGGGATATAAGCAGCAGTTGGGCTAGATGATCAGTTTTGCAAATAACAAAATACAAGAAGATCATTggga
Downstream sequence
acaaccagtctctttttctcagtttatgtatttattgtagaaaagtctcacttcctggttcccaaaatggacatttgagcctagcccaggcaattaggat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate