Basic Information
VIS ID
TVIS44028350
Fusion event
HTLV-1-LOC101929935 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p32.2
Reference genome
NCBI36/hg18
Start
56882902/56644641 (Hg38)
End
56882902/56644641 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
LOC101929935
Nearest miRNA
hsa-mir-12136/Upstream/1418918; hsa-mir-101-1/Downstream/3088586;
Nearest TSS
ENST00000473358/Upstream/65073; ENST00000610361/Downstream/631;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/65197, chr1-CpG: 68/Downstream/349
Upstream sequence
GTGCTAAAAAACACTCGAGCAAATACCGTGACTGAGATTTTTTGGAAAACTGTGGGCAAATTAGTTAAAATTGAGAGCTCTGGCGGAGAGGGTCTCTTCC
Downstream sequence
ATCTATAGGACAAAATAATTGGGAATTACAGAATAAGTAGAGGAGGACAATTCAAGAGAGCACAGAGCTGCGTGCATTCTCCCTGTGCCGCGACCTGTAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate