Basic Information
VIS ID
TVIS44028353
Fusion event
HTLV-1-RSU1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
NCBI36/hg18
Start
16772547/16690542 (Hg38)
End
16772547/16690542 (Hg38)
Orient
+
Location type
Intronic
Target gene
RSU1
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-7-5p ; hsa-mir-409-3p ; hsa-mir-409-5p
Nearest miRNA
hsa-mir-1265/Upstream/2253881; hsa-mir-107/Downstream/1154565;
Nearest TSS
ENST00000439456/Upstream/168537; ENST00000497849/Downstream/126841;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/168822, chr10-CpG: 68/Downstream/126548
Upstream sequence
CGTGATTAATGCCCAGAATGTTACTCCAAAGAGCAATCTCTGAAGAACTATACCTCACCATCCTACCAGCCACACCCCTCCTGCTTAATGGAACAAGTTC
Downstream sequence
CCATCTTCATGAAGCTAAGTCATCTCCAAGTATTTTAATTCTGTTGACACACTGAATTCATTGTTTTCTTTCAAGTATCCATGTCTCCTCTTGGAGTCCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate