Basic Information
VIS ID
TVIS44028354
Fusion event
HTLV-1-DCAF1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
NCBI36/hg18
Start
51480229/51471173 (Hg38)
End
51480229/51471173 (Hg38)
Orient
+
Location type
Intronic
Target gene
DCAF1
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-12127/Upstream/796010; hsa-let-7g/Downstream/797105;
Nearest TSS
ENST00000440867/Upstream/79905; ENST00000602430/Downstream/12665;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/77867, chr3-CpG: 76/Downstream/28153
Upstream sequence
AATTCAACGGTCAAGGTAGAAAATAAAAGCAAAGTTAGAAAAAGACTATTTCTTCTGATGTACATAGAAATCTACACAATTATCTCATAAAAGAGTTTCC
Downstream sequence
TCTCCCAAACTCAttcttttttttttttttttgacagtctcgctctgtcgcccaggctggagtgcagtggtgtgatcttggctcactgcaagctctacct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate