Basic Information
VIS ID
TVIS44028372
Fusion event
HTLV-1-LOC105376299 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
NCBI36/hg18
Start
133226779/131361571 (Hg38)
End
133226779/131361571 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376299
Nearest miRNA
hsa-let-7a-1/Upstream/735208; hsa-mir-126/Downstream/1584136;
Nearest TSS
ENST00000422679/Upstream/71759; ENST00000646130/Downstream/12065;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/53345, chr9-CpG: 45/Downstream/11730
Upstream sequence
gtgtttcctggagctgtgcacgtgttcacttgaggcattcttcccttaacagtcaaatgcccctagaagttcatataccagttaagccctaccattttgc
Downstream sequence
ctcttaatgcacatgctcgagcctacttgtccagctcctgagatcttatcaggaagctgctgatccccagtttcaggtgttcctgtttattaggagactg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate