Basic Information
VIS ID
TVIS44028374
Fusion event
HTLV-1-CRYL1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
NCBI36/hg18
Start
19935982/20463843 (Hg38)
End
19935982/20463843 (Hg38)
Orient
-
Location type
Intronic
Target gene
CRYL1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-4499/Upstream/29997; hsa-mir-1267/Downstream/3698573;
Nearest TSS
ENST00000623511/Upstream/23939; ENST00000389373/Downstream/25593;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/27644, chr13-CpG: 93/Downstream/61586
Upstream sequence
aagtgctgaagaagatatggagaaatgaaaactcaatacatttagaaatgtataaaatgacacattttggacaatatgacattattcgaagatgtagtag
Downstream sequence
taccgaaaacgcacaaatcctgcaagccagaaatGCTGCCTGTCTACGTCCATGCAGAGGAGAACCCTCAAAAAGAGGCTGCAGAATGCCCGAGGGAGAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate