Basic Information
VIS ID
TVIS44028393
Fusion event
HTLV-1-LINC02141 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
NCBI36/hg18
Start
58451507/59860102 (Hg38)
End
58451507/59860102 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02141
Nearest miRNA
hsa-mir-1225/Upstream/2087750; hsa-mir-11401/Downstream/7342219;
Nearest TSS
ENST00000527434/Upstream/4749; ENST00000565506/Downstream/499378;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/104934, chr16-CpG: 117/Downstream/2175115
Upstream sequence
GAAACCAAAACATAAAATCTGCAAATCAATATGTTTCTGGTTATTTCTAAGTGTTACCCACATTTGCTGGAGACTGAATCTACTTTCAACCAGGGAAAAT
Downstream sequence
ATATTAGCAAGAACATCCTGAGAATTAAATTATAAATGTCTGTTATAGATTTTCAATGTTTCGCAATCATGATCTTGTGAATAGTTATTTCCTGTGGCTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate