Basic Information
VIS ID
TVIS44028406
Fusion event
HTLV-1-STIM2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
NCBI36/hg18
Start
26522095/26911375 (Hg38)
End
26522095/26911375 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
STIM2
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-1185-1-3p ; hsa-mir-1185-2-3p
Nearest miRNA
hsa-mir-12113/Upstream/2391085; hsa-mir-1243/Downstream/1908207;
Nearest TSS
ENST00000502981/Upstream/49916; ENST00000477474/Downstream/91625;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/49759, chr4-CpG: 55/Downstream/3366724
Upstream sequence
aaaaaaaatgaaataaaaCATTTGAAAGGTATAGATGAAGTTAGCAATCATTTAGGGGAACTTTTAGCTAACAATCAGGGAAACTACTTTGTTTTTGCTA
Downstream sequence
GGGTCCAGGTAAATTAGCAGGTACTTCTTATGCAAAGTGAGTGATTACAGAGATTCAGAGTTCTAAGAGGCAGTCATCAGTCAGAAGGAGTTTTCACCAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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