Basic Information
VIS ID
TVIS44028411
Fusion event
HTLV-1-ZNF804B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
NCBI36/hg18
Start
88578729/89111479 (Hg38)
End
88578729/89111479 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF804B
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10525/Upstream/13196210; hsa-mir-10399/Downstream/3092536;
Nearest TSS
ENST00000635602/Upstream/315758; ENST00000611114/Downstream/106675;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/351510, chr7-CpG: 98/Downstream/1007099
Upstream sequence
acctctccagcatttcgtgtcagtgttctggattctagccattctagtaggtgtgtagtattgccttgttgttttaatttgtagctctgtaatgacagat
Downstream sequence
aacgttgagtatcttttcttatgcttatttgccacatgaatgtctttagtgagttgtctgttgagagtttttcacactttttagttgtatttttattgtt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate