Basic Information
VIS ID
TVIS44028438
Fusion event
HTLV-1-LOC105373734 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q24.3
Reference genome
NCBI36/hg18
Start
168978634/168413878 (Hg38)
End
168978634/168413878 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373734
Nearest miRNA
hsa-mir-128-1/Upstream/8005996; hsa-mir-10b/Downstream/169065;
Nearest TSS
ENST00000437798/Upstream/165737; ENST00000392687/Downstream/41984;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/165934, chr2-CpG: 94/Downstream/42029
Upstream sequence
CAGATCCTTAATAAGTCAAAGTAGCAAAATTAAAGGCAAATATTTAAATGGAACACAGTCAGGCACTGCTTTTAATTGTGTAATAAACAAGACAGATGCA
Downstream sequence
AACTTTCTAAATAAATCGTAAGCAAATTGAATCTAACATGTGCTGATGATAAGGTACTATATATTCCAGAAATAAAATAATGATCAGTAGCAGAAATCTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate